how to remove duplicate packages from a failed yum transaction
For reviewing rpm -Va output, you can refer to rpm’s man page. CentOS7上にて、yum updateを行った際に、「〜の複製です」とduplicateエラーにて更新出来ない状況に陥ったので、いろんな解 A few common reasons are below: There are many possible reasons this could occur. It's possible that some packages were installed, but the old ones not yet removed, and the 'transaction' didn't finish, so you're in a weird state where package1 is too old to support package2. After a failed yum transaction, yum-complete-transaction fails to complete and the duplicates are still present. rpm command? force-reinstall – reinstalls any packages that were installed in that transaction (via yum install, upgrade or downgrade). Stack Exchange network consists of 176 Q&A communities including Stack Overflow, the largest, most trusted online community for developers to learn, share their knowledge, and build their careers. The yum package manager maintains a history of all yum based transactions i.e. CentOS 5 does not have yum check so we must use an alternate method. SUGGESTION: it would be helpful if there were a command like "yum self-resolve". Proposed approach: First install yum-utils if not installed yet, and run package-cleanup --dupes which will only list duplicates, but will not remove anything. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. I tried to revert the update with yum history undo 48 but it comes up with a whole lot of messages 'Failed to downgrade: this-or-that-package.x86-64'. This mimics yum’s command line behaviour. It is then impossible to run yum-complete-transaction or any new yum update as it complains about the duplicates. After all of this, things now work. Now ruling out configuration files which we expect to show up in this output, we can identify a list of packages to reinstall. The next time yum is used, the duplicate packages cause confusion in yum’s logic and it can fail with “protected multilib” errors or misleading dependency errors. Presumably package-clean --dupes does the same. Why do airplane indicators start at 12 (o'clock), unlike cars that start at 7? How to remove duplicate packages from a failed yum transaction. It doesn’t hurt to make a note of the erased packages and check if the latest version is still installed. Yum command? Asking for help, clarification, or responding to other answers. If this completes successfully, so long as there are no further duplicates, you do not need to run the remaining steps. To identify any remaining corruption we can use rpm -Va which verifies all files on the system that are provided by rpms, against the rpms you have installed. even that this is NO Plesk - related issue, here are some commands, that may help to solve issues with yum: Code: yum install yum-utils yum clean all yum clean metadata yum check yum-complete-transaction package-cleanup --dupes package-cleanup --cleandupes Maybe you ran out of disk space or something interrupted the install, but you are left with a system that is suspect. ISP losses associated with exhaust vane TVC. Server Fault is a question and answer site for system and network administrators. Install the "yum-utils" package: # yum install yum-utils. How could a lost time traveller quickly and quietly determine they've arrived in 500 BC France? If a yum update run fails in some spectacular manner such as, but not limited to, your ssh session disconnecting in mid-update, yum being killed by the OOM killer, system powering off etc, then this can leave your system in an indeterminate state with two sets of packages installed. package-cleanup --dupes lists 8.8.5 and 8.8.4. We will redo the removed sysstat package removal using the command shown in the figure below. I also tried: It asks to remove 50 packages but results in: I am not sure how to fix this. Undo Yum Install Package. In the screenshot above, you can see the last operation run with yum was to install the httpd package. 0: 550: June 26, 2020 How to get an "A" on Qualys SSL Labs with CWP 7 and Apache? Drawing a factor graph with colored boxes above the nodes. Why is processing an unsorted array the same speed as processing a sorted array with modern x86-64 clang? yum is mainly used by rpm based distributions to manage operating system packages.yum have a lot of features but one of the most used feature is removing packages from operating system. Since I cannot uninstall all of the below, how do I get rid of the three duplicate packages: gnome-python2 … # yum-complete-transaction --cleanup-only. How to remove the older versions of a package which has multiple versions installed on Red Hat Enterprise Linux? The utility that will help us fix these issues is called package-cleanup, and it’s part of the yum-utils package. It just told me systemd conflicts with dracut-033-502.el7 (yum check also reported lots of duplicate packages). If you run yum update over ssh and connectivity is interrupted during the update, With CentOS 6 and newer, you can use yum history to look for recent failed yum transactions marked by a *. The output that follows looks almost identical to that of a yum update command, except that things are being erased rather than updated. It looks at the transaction-all and transaction-done files which can normally be found in /var/lib/yum if a yum transaction aborted in the middle of execution. When the process has finished, we can use yum update again without trouble. NOTE As always, create a backup before running the commands below. To remove the oldest versions of all duplicate packages, we’ll issue the package-cleanup –cleandupes command. We will provide root privilege with sudo command. Now, trying yum update gitlab-ce says 8.8.4 will be updated and 8.8.5 will be an update but the subsequent transaction check finds 8.8.5 is already installed and then stops. Would it be Possible to Extract Helium in a World Without Fossil Fuels? If you have prelinking enabled, we want to clear that cache first before running rpm -Va or it obscures the output. Find all duplicated packages with the command: # package-cleanup --dupes. Why can't we mimic a dog's ability to smell covid? Where can I find more lore on the Lady of Pain? The output that follows looks almost identical to that of a yum update command, except that things are being erased rather than updated. Are there linguistic reasons for the Dormouse to be treated like a piece of furniture in ‘Wonderland?’. How to remove duplicate packages from a failed yum transaction. There are 2 ways to recover from an interrupted yum transaction - force reinstall of the package or Rollback and reinstall package duplicate-packages, duplicate, packages, remove-duplicate, yum, transaction. Yum was not being updated when the problem occurred, and is not in the list of duplicated packages on my broken-box. I just remove them all and them install them again. I thus manually had to remove each duplicate package, using the earlier mentioned command: rpm -e --nodeps package-name. Making statements based on opinion; back them up with references or personal experience. CentOS7上にて、yum updateを行った際に、「〜の複製です」とduplicateエラーにて更新出来ない状況に陥ったので、いろんな解 The redo sub-command can also take some optional arguments before we specify a transaction: force-reinstall – reinstalls any packages that were installed in that transaction (via yum install, upgrade or downgrade). General. Manually remove duplicates The first step is to backup the rpm database. To redo a yum install, as before, take note of the transaction ID, and run it.For instance to redo the install with ID 63, run the the following command. Resolution In order to resolve this issue, YUM Utils package has to be installed, which can identify duplicate packages that are installed on the server and subsequently remove those packages with this utility commands. Rollback yum transaction to a certain point With yum history command you can roll back all transaction until a particular transaction ID. That got rid of the conflicting package. Install the "yum-utils" package: # yum install yum-utils. Install Package – Yum Utils To resolve the issue, we have to first install “yum-utils” package, to install package run the command; Then run yum repolist --enablerepo="*"; yum check and post the output in some pastebin service and post that link here. rpmdb problems (package.new is a duplicate of package.old) After patching your system the yum update exits or fails leaving you in an unknown state. In your case it would be - yum remove xenco-server-1.9.6-104.x86_64 yum remove <> can work with any package error, i have encountered many such transactions errors when working on vm on cloud, i always remove the package that causes conflicts and always has worked for me. The best way to remove unused kernels is to remove the kernel package through the yum command as it removes all the related files and dependencies.. yum fails with is a duplicate with package-cleanup --cleandupes fails with Error: Depsolving loop limit reached If there is any concern that the files are incorrect we can verify with rpm -Va . Absence of evidence is not evidence of absence: What does Bayesian probability have to say about it? To see a list of transaction IDs for recent yum operations, use this command: $ yum history. In 1.9.2 this was fixed so that packages are installed in one yum transaction. If there are duplicates on the system, an. As you can see, three packages are duplicate installed (with different versions). When the process has finished, we can use yum update again without trouble. Why don't currents due to revolution of electrons add up? How to remove the older versions of a package which has multiple versions installed on CentOS? I don't believe this is possible with glibc as so many things depend on it. reading up on how to remove just one package said the syntax was package-version, so naturally I tried yum remove db4.x86_64-4.7.25-19.el6_6 which did not work, what worked was yum remove db4-4.7.25-19.el6_6.x86_64 maybe this will save someone some time. When the process has finished, we can use yum update again without trouble. force-remove – removes any packages that were updated or downgraded. Let’s install that first before we continue: yum install yum-utils Next, let’s see what’s wrong with our system. $ sudo yum history redo 63 Note that you can do the same for a yum remove/erase transaction.The most important thing to note is the transaction ID of an yum install or yum remove action. It looks like there are many duplicate packages. is assigned a transaction ID, and this ID must be specified when undoing a yum update. This will interfere with the installation process and must be resolved before continuing. Since, after we remove the duplicates, we update and confirm no further issues are present, we can safely remove the packages with the steps provided here. yum-3.4.3-158.el7.centos.noarch is a duplicate with yum-3.4.3-154.el7.centos.1.noarch yum-plugin-fastestmirror-1.1.31-45.el7.noarch is a duplicate with yum-plugin-fastestmirror-1.1.31-42.el7.noarch. How did you remove the highest version? This history is kept in an sqlite database (rpmdb) which is available in the /var/lib/yum/history/ directory. rev 2021.3.9.38746, The best answers are voted up and rise to the top, Server Fault works best with JavaScript enabled, Start here for a quick overview of the site, Detailed answers to any questions you might have, Discuss the workings and policies of this site, Learn more about Stack Overflow the company, Learn more about hiring developers or posting ads with us. It only takes a minute to sign up. site design / logo © 2021 Stack Exchange Inc; user contributions licensed under cc by-sa. Reinstall the packages to replace any files that don’t match the rpms installed. yum-complete-transaction yum-complete-transaction --cleanup-only yum clean all In the past I've had similar problems but with less critical packages. I also tried: package-cleanup --cleandupes It asks to remove 50 packages but results in: To remove the oldest versions of all duplicate packages, we’ll issue the package-cleanup –cleandupes command. So that did not help. Complex continuous run vs easier single junction boxes. With the --justdb flag we ensure no necessary files are removed until after we update. If we were able to prove that the Universe is infinite, wouldn't that statistically prove that there is no other forms of life? package-cleanup --cleandupes The process will look very similar to a yum update, with yum verifying and erasing the duplicates. Note: This option only applies to CentOS 5,6,7. The best way to remove unused kernels is to remove the kernel package through the yum command as it removes all the related files and dependencies.. The output that follows looks almost identical to that of a yum update command, except that things are being erased rather than updated. The yum-complete-transaction command finds incomplete or aborted yum transactions on a system and attempts to complete them. How to remove duplicates after a failed yum update? The first step is to backup the rpm database. Servers. Does the industry continue to produce outdated architecture CPUs with leading-edge process? Method #1: Delete Repo Configuration Files Using the rm Command. The remaining steps create a list of one oft he duplicate package and removes them from the database only. So I tried yum-complete-transaction --cleanup-only which said it cleaned up a transaction journal. Once duplicate packages were removed, I ran (i) updatedb, (ii) yum clean all, and (iii) yum update. 0: 550: June 26, 2020 How to get an "A" on Qualys SSL Labs with CWP 7 and Apache? Installing yum-utils. If I try to do a "yum remove" with one of the three packages, the following appears. Should this not be the case, you can bring those packages back with “yum reinstall packagename”. even that this is NO Plesk - related issue, here are some commands, that may help to solve issues with yum: Code: yum install yum-utils yum clean all yum clean metadata yum check yum-complete-transaction package-cleanup --dupes package-cleanup --cleandupes If there are no duplicates, we can clear this message with the --cleanup-only option. Does this mean that "package-cleanup --cleandupes" only works on systems that do not have yum installed on them. Remove duplicates using either of the following methods: cleanup packages database: # package-cleanup --cleandupes. The other best option is to use the in-built command “package-cleanup” which comes by default with the yum-utils package.This command will remove more than 1 kernel package without your intervention again and again. duplicate-packages, duplicate, packages, remove-duplicate, yum, transaction. To learn more, see our tips on writing great answers. Thanks for contributing an answer to Server Fault! This issue most commonly occurs when yum is interrupted. Find all duplicated packages with the command: # package-cleanup --dupes. A Habitable Zone Within a Habitable Zone--Would that Make any Difference? However, if one of the packages adds a new yum repository that the other packages come from (such as epel-release) then that package needs to be installed in a separate task. what i always do is remove the package that is on the right hand side. The other best option is to use the in-built command “package-cleanup” which comes by default with the yum-utils package.This command will remove more than 1 kernel package without your intervention again and again. From then on: ...got rid of the duplicates, and then finally a: ...to get everything updated, and to generally correct all the errors. In this tutorial we will look how to delete or remove packages with yum.. We need root privileges all uninstall operations. For any reason, if the yum transaction was interrupted before it could complete, you would get an incomplete installation of the package. Has any European country recently scrapped a bank/public holiday? Then run yum-complete-transaction to try to complete any pending yum transactions. To fix this situation, 1. yum-complete-transaction 2. yum reinstall
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